Isolation of Single Cells from Mouse Periodontal Ligament

Materials and Reagents

1. 1-ml pipette and tips (STARlabs, catalog number: S1122-1830)

2. (Optional) 6-well plates (CellSTAR, catalog number: 567160)

3. Centrifuge tubes, 15-ml and 50-ml (Corning, catalog numbers: 430719, 430829)

4. 40-μm cell strainers (Falcon, catalog number: 352340)

5. (Optional) Needles 20G

6. Blades (Swann-Morton, catalog number: 0314 #27)

7. Filter (Millex, catalog number: SLGP033RS)

8. CD1 mice aged 8 weeks

9. Ice

10. Collagenase P (Roche, catalog number: 11213865001)

11. DMEM (Sigma-Aldrich, catalog number: D6429)

12. Fetal bovine serum (FBS) (Sigma, catalog number: F7524)

Equipment

1. Dissection dish

2. Biosafety cabinet

3. Stereomicroscope and light source (Zeiss Stemi 2000-C and Olympus KL1500 LCD)

4. Tweezers and fine tweezers

5. Water bath with shaking function (Grant, model: OLS 200)

6. Heraeus dissection hood (or any hood that can ensure control of contamination)

Procedure

1. Preparation for dissection

   1. In a biosafety cabinet, prepare a 6-well plate with 3 ml dissection media containing 10% FBS and place on ice (2.7 ml DMEM with 300 µl FBS).

   2. Warm the water bath to 37°C.




2. Dissection

   1. Collect mice used for PDL cell collection.

   2. Harvest the maxilla and mandible by separating the head from the body with a blade, followed by cutting above the tongue to separate the maxilla and the mandible. Then separate left and right maxillae or mandibles.

   3. Carefully remove all the gingiva tissue attached to the teeth (Figures 1A and 1B).

   4. Extract a tooth using fine tweezers by holding the crown and pulling. Be careful; the tooth can jump out of the tweezers. Discard the tooth if contaminated. If the tooth is not easy to remove, insert a 20G needle between the crown of the first and second molars until it loosens (Figure 1C).

   5. Remove any excessive tissue-bone residue. This mostly appears at the furcation area or near the apical root (Figure 1D). The PDL tissue should be attached to the tooth surface. Make sure the roots are intact.

   6. Store the teeth in a 6-well plate containing media on ice.

      
      

      
      Figure 1. Dissection procedure. A. Dissect the maxilla and mandible and remove the soft tissue around the tooth (circled area). B. Make sure there is no soft tissue left around the teeth. C. If the tooth is hard to extract, place a needle between the teeth and move around to loosen the tooth, then attempt to extract again. D. The extracted tooth, before enzyme digestion, should show PDL tissue on the root surface (blue arrow); make sure there is no bone tissue in the furcation area (magenta triangle). Keep only the intact teeth (green lines). E. Extracted teeth show a smooth root surface with no PDL tissue attached.

      
      

3. Dissociation

   1. Make 3 ml fresh Collagenase P (Col P) solution (3 U/ml) and filter through a 0.22-μm filter into a 15-ml Falcon tube.

   2. Transfer the intact teeth to a 15-ml Falcon tube and add 2 ml Col P containing 10% FBS.

   3. Place the Falcon tube in a 37°C water bath for 30-45 min with a shaking speed of 140, and homogenise 3 times every 10-15 min by pipetting the solution up and down with a 1-ml pipette. The shaking step helps to breakup collagen and release the cells. If the shaking function cannot be used, 10-min homogenisation intervals are suggested.

   4. To harvest single cells, when the cells are released from the tissue after 30-45 min, transfer the liquid through a 40-μm cell strainer into a 50-ml Falcon tube.

   5. Centrifuge at 1,200 × g for 5 min. A cell pellet may not be seen if the cell number is low.

   6. Carefully discard the supernatant.

   7. Store cells on ice for subsequent experiments.

Data analysis

Anticipated results

PDL tissue should be dissociated as shown in Figure 1E. Before enzyme digestion, the PDL tissue is attached to the tooth surface (Figure 2). After enzyme digestion, the PDL tissue is detached, including the cementoblasts on the root surface. Notably, although pulp cells are connected to PDL cells via the apical foramen, they are not released during the digestion process. This only applies to teeth with fully formed roots; if developing teeth are used, pulp cells will be released and collected together with PDL cells (Figure S1).

Figure 2. Harvested cells from adult periodontal ligament. H&E staining shows that extracted teeth have PDL tissue attached to the root surface before enzyme digestion (left). However, after digestion, cells on the tooth surface are released without contamination from pulp cells (right).

Cells isolated from periodontal tissue dissected using this protocol have been subjected to single-cell RNA sequencing and the data used to investigate cell population heterogeneity, cell changes in periodontitis, and cell-cell signalling interactions (Jing et al., 2021).

Acknowledgments

We thank Dr. Lucia Zaugg, Dr. Arshiya Banu, and Dr. Jan Krivanek for their help. Jing Zhao holds training support from the China Scholarship Council Studentship with Kings College London. Funding from the NIHR GSTFT/KCL Biomedical Research Centre is acknowledged. The protocol was first described in our original research paper, “Stem cell contributions to cementoblast differentiation in healthy periodontal ligament and periodontitis” published in Stem Cells (Zhao et al., 2021).

Competing interests

There are no conflicts of interest or competing interests.

References

1. Kaneda, T., Miyauchi, M., Takekoshi, T., Kitagawa, S., Kitagawa, M., Shiba, H., Kurihara, H. and Takata, T. (2006). Characteristics of periodontal ligament subpopulations obtained by sequential enzymatic digestion of rat molar periodontal ligament. Bone 38(3): 420-426.
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3. Park, J. C. Kim, J. M., Jung, I. H., Kim, J. C., Choi, S. H., Cho, K.S. and Kim, C. S. (2011) Isolation and characterization of human periodontal ligament (PDL) stem cells (PDLSCs) from the inflamed PDL tissue: in vitro and in vivo evaluations. J Clin Periodontol 38(8): 721-731.
4. Seo, B .M., Miura, M., Gronthos, S., Bartold, P. M., Batouli, S., Brahim, J., Young, M., Robey, P.G., Wang, C. Y. and Shi, S. (2004). Investigation of multipotent postnatal stem cells from human periodontal ligament. Lancet 364(9429): 149-155.
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